If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 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'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 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'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 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'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 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'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' 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'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 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'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 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'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 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'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 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=> 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 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'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 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'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 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'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 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'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 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'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 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'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 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'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 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'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 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'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 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'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 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'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 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'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 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'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 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'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 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'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 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'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 'fan', 'FAN07G2624' => 'fan', 'FAN07G2786' => 'fan', 'FAN09G1509' => 'fan', 'FAN11G2928' => 'fan', 'FAN12G0091' => 'fan', 'FAN12G2132' => 'fan', 'FAN14G5195' => 'fan', 'FAN16G1542' => 'fan', 'FAN17G1734' => 'fan', 'FAN17G2262' => 'fan', 'FAN19G0387' => 'fan', 'FAN21G0146' => 'fan', 'FAN22G0204' => 'fan', 'FAN23G0306' => 'fan', 'FAN23G2114' => 'fan', 'FAN25G1137' => 'fan', 'FAN26G0575' => 'fan', 'FAN28G0522' => 'fan', 'FvH4_1g29920' => 'fve', 'FvH4_3g26630' => 'fve', 'FvH4_4g13110' => 'fve', 'FvH4_4g14150' => 'fve', 'FvH4_4g15321' => 'fve', 'FvH4_4g20110' => 'fve', 'FvH4_4g20150' => 'fve', 'FvH4_4g20151' => 'fve', 'FvH4_4g20160' => 'fve', 'FvH4_4g20410' => 'fve', 'FvH4_4g33170' => 'fve', 'FvH4_4g33171' => 'fve', 'FvH4_6g20300' => 'fve', 'Glyma.02G197000' => 'gma', 'Glyma.02G242700' => 'gma', 'Glyma.03G202000' => 'gma', 'Glyma.05G150800' => 'gma', 'Glyma.07G173100' => 'gma', 'Glyma.08G048700' => 'gma', 'Glyma.08G059400' => 'gma', 'Glyma.08G107700' => 'gma', 'Glyma.10G081300' => 'gma', 'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 'gra', 'Gorai.008G170100' => 'gra', 'Gorai.011G151900' => 'gra', 'Gorai.013G030200' => 'gra', 'GSVIVG01011615001' => 'vvi', 'GSVIVG01019375001' => 'vvi', 'GSVIVG01026299001' => 'vvi', 'GSVIVG01026300001' => 'vvi', 'GSVIVG01031618001' => 'vvi', 'GSVIVG01031699001' => 'vvi', 'GSVIVG01033956001' => 'vvi', 'GSVIVG01037563001' => 'vvi', 'HanXRQChr01g0022041' => 'han', 'HanXRQChr05g0130301' => 'han', 'HanXRQChr09g0239961' => 'han', 'HanXRQChr09g0239971' => 'han', 'HanXRQChr10g0303641' => 'han', 'HanXRQChr10g0303651' => 'han', 'HanXRQChr10g0303661' => 'han', 'HanXRQChr10g0303671' => 'han', 'HanXRQChr10g0303681' => 'han', 'HanXRQChr10g0303691' => 'han', 'HanXRQChr11g0344421' => 'han', 'HanXRQChr11g0353551' => 'han', 'HanXRQChr12g0381841' => 'han', 'HanXRQChr12g0382181' => 'han', 'HanXRQChr13g0409561' => 'han', 'HanXRQChr13g0409571' => 'han', 'HanXRQChr13g0409581' => 'han', 'HanXRQChr14g0429551' => 'han', 'HanXRQChr14g0433161' => 'han', 'HanXRQChr14g0433171' => 'han', 'HanXRQChr14g0433181' => 'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ), 'gf_id' => 'HOM05D000517', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000517' ), 'data_identifier' => 'HOM05D000517', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000517', 'msa_exists' => array( 'full' => false, 'edited' => false ), 'tree_exists' => false, 'num_genes' => '1046', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p31290' => 'bna', 'A02p32370' => 'bna', 'A03p43490' => 'bna', 'A03p62450' => 'bna', 'A03p66850' => 'bna', 'A05p14260' => 'bna', 'A05p26310' => 'bna', 'A06p44000' => 'bna', 'A06p44020' => 'bna', 'A06p44140' => 'bna', 'A07p00990' => 'bna', 'A07p08630' => 'bna', 'A07p12390' => 'bna', 'A07p33150' => 'bna', 'A08p02850' => 'bna', 'A09p19510' => 'bna', 'Aa31LG2G2860' => 'aar', 'Aa31LG2G8090' => 'aar', 'Aa31LG7G10660' => 'aar', 'Aa31LG7G9390' => 'aar', 'Aa31LG8G10290' => 'aar', 'Aa31sc52G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5486' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.924' => 'aag', 'Actinidia03890' => 'ach', 'Actinidia04000' => 'ach', 'Actinidia06180' => 'ach', 'Actinidia06181' => 'ach', 'Actinidia06477' => 'ach', 'Actinidia07274' => 'ach', 'Actinidia07940' => 'ach', 'Actinidia07941' => 'ach', 'Actinidia11466' => 'ach', 'Actinidia12437' => 'ach', 'Actinidia17189' => 'ach', 'Actinidia20855' => 'ach', 'Actinidia23377' => 'ach', 'Actinidia23378' => 'ach', 'Actinidia23774' => 'ach', 'Actinidia24249' => 'ach', 'Actinidia29000' => 'ach', 'Actinidia30028' => 'ach', 'Actinidia35827' => 'ach', 'Actinidia37062' => 'ach', 'Actinidia38429' => 'ach', 'Ah.01g009550' => 'amhyb', 'Ah.04g149540' => 'amhyb', 'Ah.04g149550' => 'amhyb', 'Ah.12g059180' => 'amhyb', 'Ah.14g087750' => 'amhyb', 'Ah.16g105980' => 'amhyb', 'AL1G40250' => 'aly', 'AL2G23780' => 'aly', 'AL3G38470' => 'aly', 'AL3G38650' => 'aly', 'AL4G17950' => 'aly', 'AL5G10940' => 'aly', 'AL7G22700' => 'aly', 'Aqoxy1G00660' => 'aox', 'Aqoxy2G03909' => 'aox', 'Aqoxy3G04025' => 'aox', 'Aqoxy479s001' => 'aox', 'arahy.Tifrunner.gnm1.ann1.37DISZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5M0T8F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6R2SWB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.83HZ7F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8DLF81' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.91CD76' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ATEX7D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BF0AN0' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BKZ08E' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BM213N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXG54S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E2U6Q5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G8Z304' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HCJN0T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LXD5H4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.N8NJUA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QFFS3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R4T6GU' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.T3Y4N6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U2205T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U70NLY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.U7NMZN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XHT27G' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XW0L3B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y996HC' => 'arhy', 'AT1G24650' => 'ath', 'AT1G66150' => 'ath', 'AT2G01820' => 'ath', 'AT2G16620' => 'ath', 'AT3G23650' => 'ath', 'AT3G23750' => 'ath', 'AT4G29654' => 'ath', 'ATR0021G011' => 'atr', 'ATR0021G058' => 'atr', 'ATR0069G022' => 'atr', 'ATR0772G039' => 'atr', 'Atru.chr1.2006' => 'acertr', 'Atru.chr11.784' => 'acertr', 'Atru.chr3.3127' => 'acertr', 'Atru.chr4.1547' => 'acertr', 'Atru.chr8.1368' => 'acertr', 'AUR62000033' => 'cqu', 'AUR62001161' => 'cqu', 'AUR62001162' => 'cqu', 'AUR62001547' => 'cqu', 'AUR62009236' => 'cqu', 'AUR62010119' => 'cqu', 'AUR62013114' => 'cqu', 'AUR62018522' => 'cqu', 'AUR62019203' => 'cqu', 'AUR62020236' => 'cqu', 'AUR62020877' => 'cqu', 'AUR62020897' => 'cqu', 'AUR62022160' => 'cqu', 'AUR62030746' => 'cqu', 'AUR62036384' => 'cqu', 'AUR62041961' => 'cqu', 'AUR62041964' => 'cqu', 'BcaB03g11903' => 'bca', 'BcaB03g14017' => 'bca', 'BcaB03g14018' => 'bca', 'BcaB03g15285' => 'bca', 'BcaB03g15287' => 'bca', 'BcaB03g15288' => 'bca', 'BcaB03g15289' => 'bca', 'BcaB04g17208' => 'bca', 'BcaB04g20423' => 'bca', 'BcaB06g26534' => 'bca', 'BcaB06g26536' => 'bca', 'BcaB06g26537' => 'bca', 'BcaB06g26538' => 'bca', 'BcaB07g30370' => 'bca', 'BcaC01g01664' => 'bca', 'BcaC02g11586' => 'bca', 'BcaC03g17078' => 'bca', 'BcaC05g29053' => 'bca', 'BcaC05g29054' => 'bca', 'BcaC06g31272' => 'bca', 'BcaC06g31273' => 'bca', 'BcaC06g31274' => 'bca', 'BcaC06g31275' => 'bca', 'BcaC06g34110' => 'bca', 'BcaC06g34113' => 'bca', 'BcaC06g34126' => 'bca', 'BcaC06g34129' => 'bca', 'BcaC06g34130' => 'bca', 'BcaC06g35001' => 'bca', 'BcaC06g35243' => 'bca', 'BcaC06g35564' => 'bca', 'BcaC06g36614' => 'bca', 'BcaC07g39150' => 'bca', 'BcaC07g39151' => 'bca', 'BcaC08g46076' => 'bca', 'BcaNung02035' => 'bca', 'BcaNung02907' => 'bca', 'BcaNung05212' => 'bca', 'BolC1t03940H' => 'bol', 'BolC2t11075H' => 'bol', 'BolC3t19625H' => 'bol', 'BolC3t21322H' => 'bol', 'BolC5t33945H' => 'bol', 'BolC6t35376H' => 'bol', 'BolC6t37175H' => 'bol', 'BolC6t38257H' => 'bol', 'BolC6t39035H' => 'bol', 'BolC7t40620H' => 'bol', 'BolC7t41842H' => 'bol', 'BolC7t42342H' => 'bol', 'BolC7t43771H' => 'bol', 'BolC7t43773H' => 'bol', 'BolC7t43783H' => 'bol', 'BolC7t46445H' => 'bol', 'BolC8t47071H' => 'bol', 'BolC8t49786H' => 'bol', 'BraA01t02794Z' => 'bra', 'BraA01t03254Z' => 'bra', 'BraA02t06069Z' => 'bra', 'BraA02t08254Z' => 'bra', 'BraA03t15273Z' => 'bra', 'BraA03t15288Z' => 'bra', 'BraA03t15309Z' => 'bra', 'BraA06t27275Z' => 'bra', 'BraA06t27277Z' => 'bra', 'BraA06t27288Z' => 'bra', 'BraA07t27900Z' => 'bra', 'BraA07t28652Z' => 'bra', 'BraA07t29019Z' => 'bra', 'BraA07t30437Z' => 'bra', 'BraA07t30943Z' => 'bra', 'BraA09t37566Z' => 'bra', 'C01p39890' => 'bna', 'C02p48900' => 'bna', 'C02p48910' => 'bna', 'C02p49960' => 'bna', 'C03p73290' => 'bna', 'C03p90020' => 'bna', 'C05p52650' => 'bna', 'C05p52670' => 'bna', 'C06p02490' => 'bna', 'C06p30940' => 'bna', 'C06p30950' => 'bna', 'C06p31140' => 'bna', 'C06p39410' => 'bna', 'C07p02140' => 'bna', 'C07p13470' => 'bna', 'C07p18320' => 'bna', 'C07p32350' => 'bna', 'C07p32370' => 'bna', 'C07p32550' => 'bna', 'C07p32570' => 'bna', 'C07p32600' => 'bna', 'C07p60040' => 'bna', 'C08p02760' => 'bna', 'C08p21460' => 'bna', 'CAN.G1155.11' => 'can', 'CAN.G1245.4' => 'can', 'CAN.G125.13' => 'can', 'CAN.G137.13' => 'can', 'CAN.G1458.1' => 'can', 'CAN.G1490.13' => 'can', 'CAN.G1726.7' => 'can', 'CAN.G3.42' => 'can', 'CAN.G322.68' => 'can', 'CAN.G389.7' => 'can', 'CAN.G574.18' => 'can', 'CAN.G582.12' => 'can', 'CAN.G588.41' => 'can', 'CAN.G767.20' => 'can', 'CAN.G823.10' => 'can', 'CANSAT54G1510' => 'cansat', 'CANSAT64G1397' => 'cansat', 'CANSAT78G1167' => 'cansat', 'CANSAT78G1488' => 'cansat', 'CANSAT78G1727' => 'cansat', 'CARHR026430' => 'chi', 'CARHR099740' => 'chi', 'CARHR120310' => 'chi', 'CARHR144380' => 'chi', 'CARHR147320' => 'chi', 'CARHR237440' => 'chi', 'CARHR237470' => 'chi', 'CARHR292320' => 'chi', 'Carub.0001s2545' => 'cru', 'Carub.0002s1214' => 'cru', 'Carub.0003s2405' => 'cru', 'Carub.0003s2406' => 'cru', 'Carub.0005s0079' => 'cru', 'Carub.0007s1092' => 'cru', 'Ca_01635_v3' => 'car', 'Ca_05777_v3' => 'car', 'Ca_09056_v3' => 'car', 'Ca_13006_v3' => 'car', 'Ca_16427_v3' => 'car', 'Ca_17243_v3' => 'car', 'Ca_17994_v3' => 'car', 'Ca_18002_v3' => 'car', 'Ca_26427_v3' => 'car', 'Ca_30367_v3' => 'car', 'CBR_g16858' => 'cbr', 'CBR_g19482' => 'cbr', 'CBR_g22113' => 'cbr', 'CBR_g30400' => 'cbr', 'CBR_g34204' => 'cbr', 'CBR_g34624' => 'cbr', 'CBR_g36418' => 'cbr', 'CBR_g36420' => 'cbr', 'CBR_g40159' => 'cbr', 'Cc01_g08520' => 'ccan', 'Cc01_g16430' => 'ccan', 'Cc03_g09320' => 'ccan', 'Cc04_g12040' => 'ccan', 'Cc05_g05020' => 'ccan', 'Cc06_g06550' => 'ccan', 'Cc07_g13130' => 'ccan', 'Cc11_g06270' => 'ccan', 'CDE02G0200' => 'cde', 'CDE04G1425' => 'cde', 'CDE04G2790' => 'cde', 'CDE04G3744' => 'cde', 'CDE05G0842' => 'cde', 'CDE06G1152' => 'cde', 'CDE06G2315' => 'cde', 'CDE09G0392' => 'cde', 'CDE11G1242' => 'cde', 'CDE12G0649' => 'cde', 'Cfa002097' => 'cfa', 'Cfa007778' => 'cfa', 'Cfa008643' => 'cfa', 'Cfa009939' => 'cfa', 'Cfa015055' => 'cfa', 'Cfa015787' => 'cfa', 'Cfa020028' => 'cfa', 'Ciclev10004263m.g' => 'ccl', 'Ciclev10004322m.g' => 'ccl', 'Ciclev10010999m.g' => 'ccl', 'Ciclev10014172m.g' => 'ccl', 'Ciclev10017453m.g' => 'ccl', 'Ciclev10017498m.g' => 'ccl', 'Ciclev10018060m.g' => 'ccl', 'Ciclev10027751m.g' => 'ccl', 'CiPaw.01G114900' => 'cil', 'CiPaw.03G075000' => 'cil', 'CiPaw.05G188100' => 'cil', 'CiPaw.06G056100' => 'cil', 'CiPaw.09G020800' => 'cil', 'CiPaw.10G017300' => 'cil', 'CiPaw.13G130700' => 'cil', 'ClCG01G006700' => 'cla', 'ClCG01G008710' => 'cla', 'ClCG01G011560' => 'cla', 'ClCG06G003210' => 'cla', 'ClCG10G018350' => 'cla', 'COL.COLO4_05054' => 'col', 'COL.COLO4_05430' => 'col', 'COL.COLO4_06950' => 'col', 'COL.COLO4_10189' => 'col', 'COL.COLO4_12904' => 'col', 'COL.COLO4_29576' => 'col', 'COL.COLO4_31642' => 'col', 'COL.COLO4_31644' => 'col', 'COL.COLO4_37353' => 'col', 'COL.COLO4_37359' => 'col', 'Cpa.g.sc104.33' => 'cpa', 'Cpa.g.sc116.86' => 'cpa', 'Cpa.g.sc116.87' => 'cpa', 'Cpa.g.sc157.31' => 'cpa', 'Cpa.g.sc2.144' => 'cpa', 'Cpa.g.sc754.2' => 'cpa', 'CsaV3_1G015210' => 'csa', 'CsaV3_3G037940' => 'csa', 'CsaV3_5G024320' => 'csa', 'CsaV3_5G027860' => 'csa', 'CsaV3_6G009320' => 'csa', 'CSS0001877' => 'camsi', 'CSS0004748' => 'camsi', 'CSS0006011' => 'camsi', 'CSS0006506' => 'camsi', 'CSS0007331' => 'camsi', 'CSS0013978' => 'camsi', 'CSS0021006' => 'camsi', 'CSS0026169' => 'camsi', 'CSS0026254' => 'camsi', 'CSS0030461' => 'camsi', 'CSS0030601' => 'camsi', 'CSS0031218' => 'camsi', 'CSS0031951' => 'camsi', 'CSS0033196' => 'camsi', 'CSS0033386' => 'camsi', 'CSS0033411' => 'camsi', 'CSS0036926' => 'camsi', 'CSS0041406' => 'camsi', 'CSS0043045' => 'camsi', 'CSS0044189' => 'camsi', 'CSS0046596' => 'camsi', 'DCAR_000104' => 'dca', 'DCAR_002668' => 'dca', 'DCAR_005283' => 'dca', 'DCAR_011636' => 'dca', 'DCAR_018201' => 'dca', 'DCAR_020705' => 'dca', 'DCAR_024110' => 'dca', 'DCAR_026666' => 'dca', 'DCAR_026814' => 'dca', 'DCAR_030297' => 'dca', 'Dinv08142' => 'din', 'Dinv11761' => 'din', 'Dinv11762' => 'din', 'Dinv11763' => 'din', 'Dinv14383' => 'din', 'Dinv16120' => 'din', 'Dinv17094' => 'din', 'Dinv17095' => 'din', 'Dinv18402' => 'din', 'Dinv19055' => 'din', 'Dinv28175' => 'din', 'Dinv28832' => 'din', 'Duzib093G1175' => 'dzi', 'Duzib106G1324' => 'dzi', 'Duzib133G1269' => 'dzi', 'Duzib150G1437' => 'dzi', 'Duzib151G0638' => 'dzi', 'Duzib168G0473' => 'dzi', 'Duzib212G0757' => 'dzi', 'Duzib248G0475' => 'dzi', 'Duzib251G0267' => 'dzi', 'Duzib251G0733' => 'dzi', 'Duzib268G0358' => 'dzi', 'Duzib268G0388' => 'dzi', 'Duzib268G1158' => 'dzi', 'Duzib268G1173' => 'dzi', 'ECA233G1165' => 'eca', 'ECA233G1293' => 'eca', 'ECA233G1734' => 'eca', 'ECA233G2563' => 'eca', 'ECA234G2267' => 'eca', 'ECA238G2556' => 'eca', 'ECA238G3274' => 'eca', 'ECA238G3462' => 'eca', 'ECA246G0907' => 'eca', 'ECA246G2384' => 'eca', 'ECA246G4105' => 'eca', 'ECA246G4511' => 'eca', 'ECA246G4865' => 'eca', 'ECA248G1017' => 'eca', 'EL10Ac2g03987' => 'bvu', 'EL10Ac3g07426' => 'bvu', 'EL10Ac4g10344' => 'bvu', 'EL10Ac5g10866' => 'bvu', 'EL10Ac5g12965' => 'bvu', 'EL10Ac7g16308' => 'bvu', 'EL10Ac7g16310' => 'bvu', 'EL10Ac7g17953' => 'bvu', 'EL10Ac8g20607' => 'bvu', 'EL10Ac9g21468' => 'bvu', 'EL10As1g23083' => 'bvu', 'Eucgr.A02593' => 'egr', 'Eucgr.B02699' => 'egr', 'Eucgr.B02701' => 'egr', 'Eucgr.H00009' => 'egr', 'Eucgr.H02591' => 'egr', 'Eucgr.H02636' => 'egr', 'Eucgr.H02645' => 'egr', 'Eucgr.H02647' => 'egr', 'Eucgr.J00559' => 'egr', 'Eucgr.J01624' => 'egr', 'FAN02G4105' => 'fan', 'FAN05G3015' => 'fan', 'FAN05G5189' => 'fan', 'FAN07G0672' => 'fan', 'FAN07G0979' => 'fan', 'FAN07G1176' => 'fan', 'FAN07G2026' => 'fan', 'FAN07G2236' => 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'Glyma.11G179200' => 'gma', 'Glyma.11G214402' => 'gma', 'Glyma.11G254000' => 'gma', 'Glyma.12G094200' => 'gma', 'Glyma.12G188100' => 'gma', 'Glyma.14G212100' => 'gma', 'Glyma.18G003000' => 'gma', 'Glyma.18G042200' => 'gma', 'Gohir.A01G201500' => 'ghi', 'Gohir.A02G018000' => 'ghi', 'Gohir.A07G113100' => 'ghi', 'Gohir.A09G098800' => 'ghi', 'Gohir.A09G134300' => 'ghi', 'Gohir.A09G207501' => 'ghi', 'Gohir.A10G129400' => 'ghi', 'Gohir.A11G169100' => 'ghi', 'Gohir.A12G154100' => 'ghi', 'Gohir.A13G028100' => 'ghi', 'Gohir.D01G191400' => 'ghi', 'Gohir.D02G021200' => 'ghi', 'Gohir.D07G116600' => 'ghi', 'Gohir.D09G098200' => 'ghi', 'Gohir.D09G130800' => 'ghi', 'Gohir.D09G201100' => 'ghi', 'Gohir.D10G136800' => 'ghi', 'Gohir.D11G175300' => 'ghi', 'Gohir.D12G157200' => 'ghi', 'Gohir.D13G026900' => 'ghi', 'Gorai.001G125200' => 'gra', 'Gorai.002G235300' => 'gra', 'Gorai.005G026700' => 'gra', 'Gorai.006G115200' => 'gra', 'Gorai.006G149500' => 'gra', 'Gorai.006G224800' => 'gra', 'Gorai.007G187900' => 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'han', 'HanXRQChr14g0433671' => 'han', 'HanXRQChr14g0433691' => 'han', 'HanXRQChr14g0433911' => 'han', 'HanXRQChr14g0433921' => 'han', 'HanXRQChr14g0433931' => 'han', 'HanXRQChr14g0433941' => 'han', 'HanXRQChr14g0433951' => 'han', 'HanXRQChr14g0433961' => 'han', 'HanXRQChr14g0433971' => 'han', 'HanXRQChr14g0433991' => 'han', 'HanXRQChr14g0434001' => 'han', 'HanXRQChr14g0434011' => 'han', 'HanXRQChr14g0434021' => 'han', 'HanXRQChr14g0434031' => 'han', 'HanXRQChr14g0434051' => 'han', 'HanXRQChr14g0434061' => 'han', 'HanXRQChr14g0434071' => 'han', 'HanXRQChr14g0434081' => 'han', 'HanXRQChr14g0434091' => 'han', 'HanXRQChr14g0434101' => 'han', 'HanXRQChr14g0434111' => 'han', 'HanXRQChr14g0434121' => 'han', 'HanXRQChr14g0434131' => 'han', 'HanXRQChr14g0434141' => 'han', 'HanXRQChr14g0434151' => 'han', 'HanXRQChr14g0434161' => 'han', 'HanXRQChr14g0434171' => 'han', 'HanXRQChr14g0434181' => 'han', 'HanXRQChr14g0434191' => 'han', 'HanXRQChr14g0436011' => 'han', 'HanXRQChr15g0471781' => 'han', 'HanXRQChr15g0471861' => 'han', 'HanXRQChr15g0472001' => 'han', 'HanXRQChr17g0566051' => 'han', 'Haze_02435' => 'cav', 'Haze_10835' => 'cav', 'Haze_11668' => 'cav', 'Haze_14293' => 'cav', 'Haze_20186' => 'cav', 'Haze_23306' => 'cav', 'Hma1.2p1_0064F.1_g034680' => 'hma', 'Hma1.2p1_0101F.1_g049400' => 'hma', 'Hma1.2p1_0158F.1_g069960' => 'hma', 'Hma1.2p1_1234F.1_g269030' => 'hma', 'HPP92_005750' => 'vpl', 'HPP92_005751' => 'vpl', 'HPP92_006222' => 'vpl', 'HPP92_006223' => 'vpl', 'HPP92_011925' => 'vpl', 'HPP92_013126' => 'vpl', 'HPP92_016744' => 'vpl', 'HPP92_016745' => 'vpl', 'HPP92_016746' => 'vpl', 'HPP92_027460' => 'vpl', 'HPP92_028484' => 'vpl', 'HPP92_028485' => 'vpl', 'Hund03384' => 'sun', 'Hund06388' => 'sun', 'Hund10882' => 'sun', 'Hund19496' => 'sun', 'Hund20944' => 'sun', 'Hund24437' => 'sun', 'Lalb_Chr04g0258741' => 'lal', 'Lalb_Chr07g0186911' => 'lal', 'Lalb_Chr08g0230511' => 'lal', 'Lalb_Chr09g0330741' => 'lal', 'Lalb_Chr10g0104191' => 'lal', 'Lalb_Chr14g0376001' => 'lal', 'Lalb_Chr16g0387391' => 'lal', 'Lalb_Chr17g0338391' => 'lal', 'Lalb_Chr17g0345961' => 'lal', 'Lalb_Chr20g0111371' => 'lal', 'Lalb_Chr25g0288001' => 'lal', 'Lj1A1052T38' => 'lonja', 'Lj1A94T35' => 'lonja', 'Lj1g0000843' => 'lja', 'Lj1g0004644' => 'lja', 'Lj1g0024773' => 'lja', 'Lj2A976T51' => 'lonja', 'Lj2C1121T8' => 'lonja', 'Lj2C515T5' => 'lonja', 'Lj2g0011809' => 'lja', 'Lj3A861T63' => 'lonja', 'Lj3g0015955' => 'lja', 'Lj3g0028117' => 'lja', 'Lj4g0004584' => 'lja', 'Lj4g0013163' => 'lja', 'Lj6A367T84' => 'lonja', 'Lj6C366G7' => 'lonja', 'Lj6C366T7' => 'lonja', 'Lj6C366T8' => 'lonja', 'Lj6C367T2' => 'lonja', 'Lj6C733T14' => 'lonja', 'Lj6g0010588' => 'lja', 'Lj6g0016715' => 'lja', 'LjContig00141g0020691' => 'lja', 'Lsat_1_v5_gn_1_70280' => 'lsa', 'Lsat_1_v5_gn_2_46981' => 'lsa', 'Lsat_1_v5_gn_2_54440' => 'lsa', 'Lsat_1_v5_gn_2_65701' => 'lsa', 'Lsat_1_v5_gn_3_104620' => 'lsa', 'Lsat_1_v5_gn_4_23100' => 'lsa', 'Manes.01G056800' => 'mes', 'Manes.01G121400' => 'mes', 'Manes.08G033400' => 'mes', 'Manes.09G045200' => 'mes', 'Manes.11G138700' => 'mes', 'Manes.15G137200' => 'mes', 'Manes.17G086400' => 'mes', 'Mapoly0105s0050' => 'mpo', 'MBI01_g25196_MAGBIO' => 'mbi', 'MBI07_g17482_MAGBIO' => 'mbi', 'MBI08_g45379_MAGBIO' => 'mbi', 'MBI13_g04496_MAGBIO' => 'mbi', 'MBI19_g23693_MAGBIO' => 'mbi', 'MCO11G121' => 'mco', 'MD00G1049600' => 'mdo', 'MD00G1204200' => 'mdo', 'MD03G1154600' => 'mdo', 'MD04G1019100' => 'mdo', 'MD09G1266500' => 'mdo', 'MD09G1266600' => 'mdo', 'MD09G1266700' => 'mdo', 'MD09G1266800' => 'mdo', 'MD12G1040200' => 'mdo', 'MD13G1017200' => 'mdo', 'MD13G1203900' => 'mdo', 'MD14G1038700' => 'mdo', 'MD16G1015000' => 'mdo', 'MD16G1015100' => 'mdo', 'MD16G1015200' => 'mdo', 'MD17G1262700' => 'mdo', 'Medtr1g033000' => 'mtr', 'Medtr1g033010' => 'mtr', 'Medtr1g033040' => 'mtr', 'Medtr2g087230' => 'mtr', 'Medtr3g084510' => 'mtr', 'Medtr4g051605' => 'mtr', 'Medtr5g077430' => 'mtr', 'Medtr5g079540' => 'mtr', 'Medtr6g006200' => 'mtr', 'Medtr7g082310' => 'mtr', 'Medtr7g083980' => 'mtr', 'Medtr7g086800' => 'mtr', 'Medtr7g106210' => 'mtr', 'Medtr8g083240' => 'mtr', 'Medtr8g106100' => 'mtr', 'MELO3C005267.2' => 'cme', 'MELO3C009538.2' => 'cme', 'MELO3C021159.2' => 'cme', 'MELO3C025088.2' => 'cme', 'Migut.D02367' => 'egut', 'Migut.D02395' => 'egut', 'Migut.E00505' => 'egut', 'Migut.G00784' => 'egut', 'Migut.H02235' => 'egut', 'Migut.J00704' => 'egut', 'Migut.N00428' => 'egut', 'Migut.N00644' => 'egut', 'Migut.N02458' => 'egut', 'MSTRG.10397' => 'ama', 'MSTRG.12386' => 'ama', 'MSTRG.12762' => 'ama', 'MSTRG.13639' => 'ama', 'MSTRG.19310' => 'ama', 'MSTRG.2113' => 'ama', 'MSTRG.2630' => 'ama', 'MSTRG.4254' => 'ama', 'MSTRG.4255' => 'ama', 'MSTRG.4256' => 'ama', 'MSTRG.5895' => 'ama', 'MSTRG.9784' => 'ama', 'Nitab4.5_0000020g0010' => 'nta', 'Nitab4.5_0000037g0020' => 'nta', 'Nitab4.5_0000147g0100' => 'nta', 'Nitab4.5_0000231g0490' => 'nta', 'Nitab4.5_0000296g0020' => 'nta', 'Nitab4.5_0000380g0070' => 'nta', 'Nitab4.5_0000856g0130' => 'nta', 'Nitab4.5_0001574g0060' => 'nta', 'Nitab4.5_0001663g0120' => 'nta', 'Nitab4.5_0003234g0020' => 'nta', 'Nitab4.5_0004452g0040' => 'nta', 'Nitab4.5_0005204g0010' => 'nta', 'Nitab4.5_0005513g0040' => 'nta', 'Nitab4.5_0006256g0020' => 'nta', 'Nitab4.5_0008132g0020' => 'nta', 'Nitab4.5_0009512g0010' => 'nta', 'Nitab4.5_0011877g0030' => 'nta', 'Nitab4.5_0025339g0010' => 'nta', 'Nn1g08139' => 'nnu', 'Nn1g08149' => 'nnu', 'Nn3g20105' => 'nnu', 'Nn4g24482' => 'nnu', 'Nn6g34693' => 'nnu', 'Nn6g34694' => 'nnu', 'Nn8g41016' => 'nnu', 'Oeu002930.1' => 'oeu', 'Oeu003625.2' => 'oeu', 'Oeu009046.1' => 'oeu', 'Oeu009418.1' => 'oeu', 'Oeu014243.1' => 'oeu', 'Oeu031456.1' => 'oeu', 'Oeu036125.1' => 'oeu', 'Oeu045043.2' => 'oeu', 'Oeu048837.1' => 'oeu', 'Oeu048945.1' => 'oeu', 'Oeu050715.1' => 'oeu', 'Oeu052617.1' => 'oeu', 'Oeu057856.1' => 'oeu', 'Oeu059513.1' => 'oeu', 'Os03g0717000' => 'osa', 'Os04g0685900' => 'osa', 'Os05g0154300' => 'osa', 'Os11g0448000' => 'osa', 'Peaxi162Scf00098g00012' => 'pax', 'Peaxi162Scf00120g00018' => 'pax', 'Peaxi162Scf00205g00817' => 'pax', 'Peaxi162Scf00211g00079' => 'pax', 'Peaxi162Scf00286g01035' => 'pax', 'Peaxi162Scf00378g00118' => 'pax', 'Peaxi162Scf00487g00218' => 'pax', 'Peaxi162Scf00516g00424' => 'pax', 'Peaxi162Scf00586g00037' => 'pax', 'Peaxi162Scf01286g00126' => 'pax', 'PGR004G2679' => 'pgr', 'PGR042G3084' => 'pgr', 'PGR083G1802' => 'pgr', 'PGR083G1966' => 'pgr', 'PGR083G2175' => 'pgr', 'PGR102G0503' => 'pgr', 'PGR119G2004' => 'pgr', 'PGR142G2402' => 'pgr', 'PGSC0003DMG400004667' => 'stu', 'PGSC0003DMG400005896' => 'stu', 'PGSC0003DMG400008728' => 'stu', 'PGSC0003DMG400020594' => 'stu', 'PGSC0003DMG400021353' => 'stu', 'PGSC0003DMG400025921' => 'stu', 'PGSC0003DMG400025922' => 'stu', 'PGSC0003DMG400028147' => 'stu', 'PGSC0003DMG400028688' => 'stu', 'Phvul.001G195500' => 'pvu', 'Phvul.001G265500' => 'pvu', 'Phvul.002G324600' => 'pvu', 'Phvul.003G015800' => 'pvu', 'Phvul.005G120300' => 'pvu', 'Phvul.007G268200' => 'pvu', 'Phvul.008G238600' => 'pvu', 'Potri.001G217700' => 'ptr', 'Potri.004G084000' => 'ptr', 'Potri.005G049200' => 'ptr', 'Potri.006G073900' => 'ptr', 'Potri.006G203500' => 'ptr', 'Potri.008G137801' => 'ptr', 'Potri.009G020400' => 'ptr', 'Potri.010G103000' => 'ptr', 'Potri.013G035900' => 'ptr', 'Potri.016G070500' => 'ptr', 'Potri.017G134900' => 'ptr', 'Potri.018G141000' => 'ptr', 'Pp3c10_2340' => 'ppa', 'Pp3c15_17310' => 'ppa', 'Pp3c15_17314' => 'ppa', 'Pp3c23_5250' => 'ppa', 'PRCOL_00005591' => 'pco', 'Prupe.1G168400' => 'ppe', 'Prupe.1G168500' => 'ppe', 'Prupe.1G336300' => 'ppe', 'Prupe.3G164300' => 'ppe', 'Prupe.6G143800' => 'ppe', 'Prupe.7G094700' => 'ppe', 'Psat0s3619g0240' => 'psa', 'Psat2g045000' => 'psa', 'Psat2g150080' => 'psa', 'Psat3g029240' => 'psa', 'Psat5g099200' => 'psa', 'Psat5g259600' => 'psa', 'Psat6g050840' => 'psa', 'Psat7g004520' => 'psa', 'Psat7g075840' => 'psa', 'Psat7g206520' => 'psa', 'Psat7g254200' => 'psa', 'PSO017G6370' => 'pso', 'PSO063G0148' => 'pso', 'PSO063G5118' => 'pso', 'PSO210G3916' => 'pso', 'PSO210G3959' => 'pso', 'PSO210G5476' => 'pso', 'PSO210G5744' => 'pso', 'PSO210G6375' => 'pso', 'PSO210G6391' => 'pso', 'PSO210G7742' => 'pso', 'PSO339G1983' => 'pso', 'PSO339G3856' => 'pso', 'PSO384G0203' => 'pso', 'PSO384G4845' => 'pso', 'PSO386G0171' => 'pso', 'PSO386G0272' => 'pso', 'PSO782G0512' => 'pso', 'QL01p020110' => 'qlo', 'QL02p059687' => 'qlo', 'QL03p038510' => 'qlo', 'QL06p026954' => 'qlo', 'QL07p036767' => 'qlo', 'QL08p005234' => 'qlo', 'QL08p005251' => 'qlo', 'QL08p006219' => 'qlo', 'QL08p006368' => 'qlo', 'QL08p006391' => 'qlo', 'QL08p006459' => 'qlo', 'QL93p0175_0070' => 'qlo', 'QL93p0175_0082' => 'qlo', 'QL93p0175_0086' => 'qlo', 'RcHm_v2.0_Chr3g0475921' => 'rch', 'RcHm_v2.0_Chr3g0492421' => 'rch', 'RcHm_v2.0_Chr3g0492431' => 'rch', 'RcHm_v2.0_Chr4g0412891' => 'rch', 'RcHm_v2.0_Chr4g0413671' => 'rch', 'RcHm_v2.0_Chr4g0425881' => 'rch', 'RcHm_v2.0_Chr4g0442211' => 'rch', 'RcHm_v2.0_Chr4g0442221' => 'rch', 'RcHm_v2.0_Chr4g0442231' => 'rch', 'RcHm_v2.0_Chr4g0442251' => 'rch', 'RcHm_v2.0_Chr4g0442481' => 'rch', 'RcHm_v2.0_Chr5g0048201' => 'rch', 'RcHm_v2.0_Chr7g0220551' => 'rch', 'Rhsim01G0250100' => 'rsi', 'Rhsim02G0066400' => 'rsi', 'Rhsim03G0065700' => 'rsi', 'Rhsim09G0037700' => 'rsi', 'Rhsim09G0087000' => 'rsi', 'Rhsim10G0181400' => 'rsi', 'Rhsim13G0050500' => 'rsi', 'Rhsim13G0195700' => 'rsi', 'Sabra04G0055700' => 'sbr', 'Sabra05G0044500' => 'sbr', 'Sabra06G0055100' => 'sbr', 'Sabra06G0156700' => 'sbr', 'Sabra08G0104900' => 'sbr', 'Sabra09G0011900' => 'sbr', 'Sabra10G0075600' => 'sbr', 'Sabra13G0035200' => 'sbr', 'Sabra16G0070700' => 'sbr', 'Sabra16G0072900' => 'sbr', 'Sabra16G0126200' => 'sbr', 'Sabra17G0110800' => 'sbr', 'Sabra17G0113800' => 'sbr', 'SalBow2G1856' => 'sbo', 'SalBow3G0453' => 'sbo', 'SalBow3G2944' => 'sbo', 'SalBow3G3491' => 'sbo', 'SalBow3G4525' => 'sbo', 'SalBow6G2453' => 'sbo', 'SalBow8G2192' => 'sbo', 'Sc05g0001860' => 'sci', 'Sc12g0004880' => 'sci', 'Sc13g0000500' => 'sci', 'Sc14g0006770' => 'sci', 'Sc14g0007660' => 'sci', 'Sc19g0007410' => 'sci', 'Sc21g0006830' => 'sci', 'Sc22g0002870' => 'sci', 'Sed0000475' => 'sed', 'Sed0002555' => 'sed', 'Sed0003545' => 'sed', 'Sed0007677' => 'sed', 'Sed0013463' => 'sed', 'Sed0020781' => 'sed', 'Sed0023470' => 'sed', 'Sed0024755' => 'sed', 'SEGI_01064' => 'sgi', 'SEGI_16951' => 'sgi', 'SEGI_18171' => 'sgi', 'SEGI_25664' => 'sgi', 'SEGI_37174' => 'sgi', 'SEGI_39988' => 'sgi', 'SGA_v2.0_scaffold17G08017' => 'sas', 'SGA_v2.0_scaffold23G10142' => 'sas', 'SGA_v2.0_scaffold295G47486' => 'sas', 'SGA_v2.0_scaffold2G00952' => 'sas', 'SGA_v2.0_scaffold31G12849' => 'sas', 'SGA_v2.0_scaffold3G01758' => 'sas', 'SGA_v2.0_scaffold77G25278' => 'sas', 'SGA_v2.0_scaffold95G28713' => 'sas', 'SHI04424' => 'shi', 'SHI06428' => 'shi', 'SMO141G0092' => 'smo', 'SMO172G0007' => 'smo', 'SMO174G0257' => 'smo', 'SMO197G0030' => 'smo', 'SMO245G0022' => 'smo', 'SMO361G0672' => 'smo', 'Solyc01g007130.3' => 'sly', 'Solyc01g108840.3' => 'sly', 'Solyc01g108850.2' => 'sly', 'Solyc02g086960.2' => 'sly', 'Solyc06g074070.3' => 'sly', 'Solyc09g057680.3' => 'sly', 'Solyc09g092460.4' => 'sly', 'Solyc10g081910.2' => 'sly', 'Solyc11g006040.2' => 'sly', 'Solyc12g098570.2' => 'sly', 'Sopen00g009410' => 'spe', 'Sopen01g003110' => 'spe', 'Sopen01g051030' => 'spe', 'Sopen01g051040' => 'spe', 'Sopen06g030490' => 'spe', 'Sopen09g021150' => 'spe', 'Sopen09g035360' => 'spe', 'Sopen10g032420' => 'spe', 'Sopen11g001980' => 'spe', 'Sp1g19770' => 'spa', 'Sp1g23130' => 'spa', 'Sp2g13250' => 'spa', 'Sp3g21460' => 'spa', 'Sp5g21210' => 'spa', 'TAR629G1793' => 'tar', 'TAR633G0422' => 'tar', 'TAR636G0888' => 'tar', 'TAR636G2574' => 'tar', 'THA.LOC104805093' => 'tha', 'THA.LOC104805638' => 'tha', 'THA.LOC104808682' => 'tha', 'THA.LOC104816620' => 'tha', 'THA.LOC104822048' => 'tha', 'THA.LOC104823598' => 'tha', 'THA.LOC104825569' => 'tha', 'THA.LOC104826803' => 'tha', 'Thecc.02G306300' => 'tca', 'Thecc.04G057400' => 'tca', 'Thecc.04G193000' => 'tca', 'Thecc.05G104200' => 'tca', 'Thecc.09G273700' => 'tca', 'Thhalv10002394m.g' => 'esa', 'Thhalv10003606m.g' => 'esa', 'Thhalv10009550m.g' => 'esa', 'Thhalv10009860m.g' => 'esa', 'Thhalv10018085m.g' => 'esa', 'Thhalv10022382m.g' => 'esa', 'Thhalv10027392m.g' => 'esa', 'TPR.G11938' => 'tpr', 'TPR.G12749' => 'tpr', 'TPR.G18896' => 'tpr', 'TPR.G18901' => 'tpr', 'TPR.G18906' => 'tpr', 'TPR.G19639' => 'tpr', 'TPR.G22129' => 'tpr', 'TPR.G2606' => 'tpr', 'TPR.G30753' => 'tpr', 'TPR.G35569' => 'tpr', 'TPR.G36909' => 'tpr', 'TPR.G40175' => 'tpr', 'TPR.G4214' => 'tpr', 'TPR.G4676' => 'tpr', 'TPR.G6422' => 'tpr', 'TPR.G6470' => 'tpr', 'TPR.G6500' => 'tpr', 'TPR.G7272' => 'tpr', 'TPR.G9987' => 'tpr', 'TWI18G1357' => 'twi', 'TWI31G0725' => 'twi', 'TWI31G1131' => 'twi', 'TWI53G0982' => 'twi', 'TWI53G1624' => 'twi', 'TWI74G0613' => 'twi', 'TWI77G0674' => 'twi', 'unitig_736.g22465' => 'ugi', 'vmacro00558' => 'vma', 'vmacro02800' => 'vma', 'vmacro03958' => 'vma', 'vmacro07469' => 'vma', 'vmacro14712' => 'vma', 'vmacro15576' => 'vma', 'vmacro23216' => 'vma', 'VMungo0251G0125' => 'vmu', 'VMungo0251G2555' => 'vmu', 'VMungo0251G3617' => 'vmu', 'VMungo0331G0280' => 'vmu', 'VMungo0460G0001' => 'vmu', 'VMungo0647G0647' => 'vmu', 'VMungo0647G0663' => 'vmu', 'VMungo0647G0682' => 'vmu', 'VMungo0647G0686' => 'vmu', 'VMungo0647G0966' => 'vmu', 'VMungo0647G1495' => 'vmu', 'VMungo0647G2101' => 'vmu', 'VMungo0720G1394' => 'vmu', 'VMungo1080G1745' => 'vmu', 'VMungo1215G1437' => 'vmu', 'VMungo1215G1623' => 'vmu', 'VMungo1383G0479' => 'vmu', 'VMungo1383G0946' => 'vmu', 'VMungo1383G1758' => 'vmu', 'VMungo1383G2328' => 'vmu', 'VMungo1383G2480' => 'vmu', 'VMungo1383G3353' => 'vmu', 'Zm00001eb055210' => 'zma', 'Zm00001eb091830' => 'zma', 'Zm00001eb091840' => 'zma', 'Zm00001eb112700' => 'zma', 'Zm00001eb169350' => 'zma', 'Zm00001eb216120' => 'zma', 'Zm00001eb434220' => 'zma' ) $gf_id = 'HOM05D000517' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000517' ) $data_identifier = 'HOM05D000517' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 40, 'aar' => (int) 6, 'aag' => (int) 2, 'ach' => (int) 21, 'amhyb' => (int) 6, 'aly' => (int) 7, 'aox' => (int) 4, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 17, 'bca' => (int) 38, 'bol' => (int) 18, 'bra' => (int) 16, 'can' => (int) 15, 'cansat' => (int) 5, 'chi' => (int) 8, 'cru' => (int) 6, 'car' => (int) 10, 'cbr' => (int) 9, 'ccan' => (int) 8, 'cde' => (int) 10, 'cfa' => (int) 7, 'ccl' => (int) 8, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 10, 'cpa' => (int) 6, 'csa' => (int) 5, 'camsi' => (int) 21, 'dca' => (int) 10, 'din' => (int) 12, 'dzi' => (int) 14, 'eca' => (int) 14, 'bvu' => (int) 11, 'egr' => (int) 10, 'fan' => (int) 26, 'fve' => (int) 13, 'gma' => (int) 17, 'ghi' => (int) 20, 'gra' => (int) 10, 'vvi' => (int) 8, 'han' => (int) 55, 'cav' => (int) 6, 'hma' => (int) 4, 'vpl' => (int) 12, 'sun' => (int) 6, 'lal' => (int) 11, 'lonja' => (int) 12, 'lja' => (int) 11, 'lsa' => (int) 6, 'mes' => (int) 7, 'mpo' => (int) 1, 'mbi' => (int) 5, 'mco' => (int) 1, 'mdo' => (int) 16, 'mtr' => (int) 15, 'cme' => (int) 4, 'egut' => (int) 9, 'ama' => (int) 12, 'nta' => (int) 18, 'nnu' => (int) 7, 'oeu' => (int) 14, 'osa' => (int) 4, 'pax' => (int) 10, 'pgr' => (int) 8, 'stu' => (int) 9, 'pvu' => (int) 7, 'ptr' => (int) 12, 'ppa' => (int) 4, 'pco' => (int) 1, 'ppe' => (int) 6, 'psa' => (int) 11, 'pso' => (int) 17, 'qlo' => (int) 14, 'rch' => (int) 13, 'rsi' => (int) 8, 'sbr' => (int) 13, 'sbo' => (int) 7, 'sci' => (int) 8, 'sed' => (int) 8, 'sgi' => (int) 6, 'sas' => (int) 8, 'shi' => (int) 2, 'smo' => (int) 6, 'sly' => (int) 10, 'spe' => (int) 9, 'spa' => (int) 5, 'tar' => (int) 4, 'tha' => (int) 8, 'tca' => (int) 5, 'esa' => (int) 7, 'tpr' => (int) 19, 'twi' => (int) 7, 'ugi' => (int) 1, 'vma' => (int) 7, 'vmu' => (int) 22, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb434220' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1